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Oryza sativa QTL "CQB11" (plant height)
| QTL Accession ID | CQB11 | ||||
|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
| Trait Symbol | PTHT | ||||
| Trait Name | plant height | ||||
| Published Symbol | ph-4 | ||||
| Trait Synonym(s) |
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| Trait Category | Vigor | ||||
| Chromosome | 4 | ||||
| Comments | The trait plant height, was determined based on the average values of 10 individual plants from each line. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 20,171,917-22,355,854 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | IGCN ZYQ18/JX17 DH QTL 1998 | BNL6.32 | 4 | 85.7-105.5 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| CQB11 | 4 | 85.7 | 105.5 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | C513 | RFLP | Oryza sativa | qtl_marker |
| To | C975 | RFLP | Oryza sativa | qtl_marker |
| To | G271 | RFLP | Oryza sativa | qtl_marker |
| To | CT500 | SSR | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000207) | Lu-C-F et al., 1997 (IAGP) Lu-C et al., 1996 (IAGP) |
| Plant Structure | (PO:0009006) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| (PO:0007134) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
| (GRO:0007140) | Gramene curators, 2007 (IC) | |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Lu-C-F et al., 1997 (SM) Lu-C et al., 1996 (SM) |
Database Cross-References (2)
SNPs (12,803)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr4 | 20,171,917 | 22,355,854 | ~160K SNPs x 20 accessions (McNally 2... | 1,292 | Search for SNPs |
| chr4 | 20,171,917 | 22,355,854 | '1536 chip' - 1311 SNPs x 395 rice ac... | 12 | Search for SNPs |
| chr4 | 20,171,917 | 22,355,854 | Huang X, et al, Nat Genetics 2010 Nov... | 5,619 | Search for SNPs |
| chr4 | 20,171,917 | 22,355,854 | RiceDiversity 44K SNP assay, 34 trait... | 5,619 | Search for SNPs |
| chr4 | 20,171,917 | 22,355,854 | RiceDiversity 44K SNP assay, 34 trait... | 261 | Search for SNPs |
