QTL Accession ID | CQAW7 | ||||||||
---|---|---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||
Trait Symbol | RTNB | ||||||||
Trait Name | root number | ||||||||
Published Symbol | |||||||||
Trait Synonym(s) |
|
||||||||
Trait Category | Vigor | ||||||||
Chromosome | 2 | ||||||||
Comments | CO39 allele contributed for greater number of roots. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 27,034,342-27,483,257 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI Mor/CO39 QTL 1994 | BNL6.32 | 2 | 41.7-49.1 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
CQAW7 | 2 | 41.7 | 49.1 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG102 | RFLP | Oryza sativa | qtl_marker |
To | RG139 | RFLP | Oryza sativa | qtl_marker |
To | RG188 | RFLP | Oryza sativa | qtl_marker |
To | RZ103 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000084) | Ray-J-D et al., 1996 (IAGP) |
Plant Structure | (PO:0009005) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Ray-J-D et al., 1996 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr2 | 27,034,342 | 27,483,257 | ~160K SNPs x 20 accessions (McNally 2... | 190 | Search for SNPs |
chr2 | 27,034,342 | 27,483,257 | '1536 chip' - 1311 SNPs x 395 rice ac... | 1 | Search for SNPs |
chr2 | 27,034,342 | 27,483,257 | Huang X, et al, Nat Genetics 2010 Nov... | 940 | Search for SNPs |
chr2 | 27,034,342 | 27,483,257 | RiceDiversity 44K SNP assay, 34 trait... | 940 | Search for SNPs |
chr2 | 27,034,342 | 27,483,257 | RiceDiversity 44K SNP assay, 34 trait... | 35 | Search for SNPs |