QTL Accession ID | CQAW25 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||||
Trait Symbol | TINB | ||||||||||
Trait Name | tiller number | ||||||||||
Published Symbol | |||||||||||
Trait Synonym(s) |
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Trait Category | Vigor | ||||||||||
Chromosome | 8 | ||||||||||
Comments | The authors found a positive correlation between tiller number and the total number of roots per plant (RTNB)(r=0.52, p<0.0001). The trait was weakly correlated with number pof penetrated roots (PENRTNB) (r=0.31, p<0.0001). The trait Tiller number was not at all correlated with the root penetration index (RTPNID) (r=0.03, p<0.67). |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 8 | 17,437,513-27,109,191 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI Mor/CO39 QTL 1994 | BNL6.32 | 8 | 58.7-78.2 cM | View Comparative Map | |||
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Name | Chromosome | Start | Stop |
---|---|---|---|
CQAW25 | 8 | 58.7 | 78.2 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG978 | RFLP | Oryza sativa | qtl_marker |
To | RG1 | RFLP | Oryza sativa | qtl_marker |
To | RZ66 | RFLP | Oryza sativa | qtl_marker |
To | RG136 | RFLP | Oryza sativa | qtl_marker |
To | RZ562 | RFLP | Oryza sativa | qtl_marker |
To | RZ649 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000346) | Ray-J-D et al., 1996 (IAGP) |
Plant Structure | (PO:0005001) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007073) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007049) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Ray-J-D et al., 1996 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr8 | 17,437,513 | 27,109,191 | ~160K SNPs x 20 accessions (McNally 2... | 2,740 | Search for SNPs |
chr8 | 17,437,513 | 27,109,191 | '1536 chip' - 1311 SNPs x 395 rice ac... | 29 | Search for SNPs |
chr8 | 17,437,513 | 27,109,191 | Huang X, et al, Nat Genetics 2010 Nov... | 21,592 | Search for SNPs |
chr8 | 17,437,513 | 27,109,191 | RiceDiversity 44K SNP assay, 34 trait... | 21,592 | Search for SNPs |
chr8 | 17,437,513 | 27,109,191 | RiceDiversity 44K SNP assay, 34 trait... | 807 | Search for SNPs |