QTL Accession ID | CQAW19 | ||||||||
---|---|---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||
Trait Symbol | RTNB | ||||||||
Trait Name | root number | ||||||||
Published Symbol | |||||||||
Trait Synonym(s) |
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Trait Category | Vigor | ||||||||
Chromosome | 6 | ||||||||
Comments | CO39 allele contributed for greater number of roots. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 2,363,670-6,720,901 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI Mor/CO39 QTL 1994 | BNL6.32 | 6 | 0-16.4 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
CQAW19 | 6 | 0 | 16.4 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | CDO475 | RFLP | Avena sativa | qtl_marker |
To | RZ516 | RFLP | Oryza sativa | qtl_marker |
To | RZ398 | RFLP | Oryza sativa | qtl_marker |
To | RZ144 | RFLP | Oryza sativa | qtl_marker |
To | RZ192 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000084) | Ray-J-D et al., 1996 (IAGP) |
Plant Structure | (PO:0009005) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Ray-J-D et al., 1996 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr6 | 2,363,670 | 6,720,901 | ~160K SNPs x 20 accessions (McNally 2... | 2,469 | Search for SNPs |
chr6 | 2,363,670 | 6,720,901 | '1536 chip' - 1311 SNPs x 395 rice ac... | 22 | Search for SNPs |
chr6 | 2,363,670 | 6,720,901 | Huang X, et al, Nat Genetics 2010 Nov... | 11,657 | Search for SNPs |
chr6 | 2,363,670 | 6,720,901 | RiceDiversity 44K SNP assay, 34 trait... | 11,657 | Search for SNPs |
chr6 | 2,363,670 | 6,720,901 | RiceDiversity 44K SNP assay, 34 trait... | 537 | Search for SNPs |