QTL Accession ID | CQAW18 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||||
Trait Symbol | TINB | ||||||||||
Trait Name | tiller number | ||||||||||
Published Symbol | |||||||||||
Trait Synonym(s) |
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Trait Category | Vigor | ||||||||||
Chromosome | 6 | ||||||||||
Comments | The authors found a positive correlation between tiller number and the total number of roots per plant (RTNB)(r=0.52, p<0.0001). The trait was weakly correlated with number pof penetrated roots (PENRTNB) (r=0.31, p<0.0001). The trait Tiller number was not at all correlated with the root penetration index (RTPNID) (r=0.03, p<0.67). |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 2,363,670-3,459,750 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI Mor/CO39 QTL 1994 | BNL6.32 | 6 | 0-6.3 cM | View Comparative Map | |||
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Name | Chromosome | Start | Stop |
---|---|---|---|
CQAW18 | 6 | 0 | 6.3 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | CDO475 | RFLP | Avena sativa | qtl_marker |
To | RZ516 | RFLP | Oryza sativa | qtl_marker |
To | RZ398 | RFLP | Oryza sativa | qtl_marker |
To | RZ144 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000346) | Ray-J-D et al., 1996 (IAGP) |
Plant Structure | (PO:0005001) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007073) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007049) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Ray-J-D et al., 1996 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr6 | 2,363,670 | 3,459,750 | ~160K SNPs x 20 accessions (McNally 2... | 1,055 | Search for SNPs |
chr6 | 2,363,670 | 3,459,750 | '1536 chip' - 1311 SNPs x 395 rice ac... | 8 | Search for SNPs |
chr6 | 2,363,670 | 3,459,750 | Huang X, et al, Nat Genetics 2010 Nov... | 2,400 | Search for SNPs |
chr6 | 2,363,670 | 3,459,750 | RiceDiversity 44K SNP assay, 34 trait... | 2,400 | Search for SNPs |
chr6 | 2,363,670 | 3,459,750 | RiceDiversity 44K SNP assay, 34 trait... | 200 | Search for SNPs |