QTL Accession ID | CQAS6 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||||||||||
Trait Symbol | SPKNB | ||||||||||||||||
Trait Name | spikelet number | ||||||||||||||||
Published Symbol | |||||||||||||||||
Trait Synonym(s) |
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Trait Category | Yield | ||||||||||||||||
Chromosome | 1 | ||||||||||||||||
Comments | Trait was assyed for number of spikelets per panicle. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 35,708,646-42,254,617 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Cornell 9024/LH422 RI QTL 1996 | BNL6.32 | 1 | 0-43.6 cM | View Comparative Map | |||
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Name | Chromosome | Start | Stop |
---|---|---|---|
CQAS6 | 1 | 0 | 43.6 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG469 | RFLP | Oryza sativa | qtl_marker |
To | RG459 | RFLP | Oryza sativa | qtl_marker |
To | RG350 | RFLP | Oryza sativa | qtl_marker |
To | RZ739 | RFLP | Oryza sativa | qtl_marker |
To | XNpb370 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000456) | Xiao-J-H et al., 1996 (IAGP) |
Plant Structure | (PO:0009051) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Xiao-J-H et al., 1996 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr1 | 35,708,646 | 42,254,617 | ~160K SNPs x 20 accessions (McNally 2... | 4,734 | Search for SNPs |
chr1 | 35,708,646 | 42,254,617 | '1536 chip' - 1311 SNPs x 395 rice ac... | 22 | Search for SNPs |
chr1 | 35,708,646 | 42,254,617 | Huang X, et al, Nat Genetics 2010 Nov... | 10,498 | Search for SNPs |
chr1 | 35,708,646 | 42,254,617 | RiceDiversity 44K SNP assay, 34 trait... | 10,498 | Search for SNPs |
chr1 | 35,708,646 | 42,254,617 | RiceDiversity 44K SNP assay, 34 trait... | 962 | Search for SNPs |