QTL Accession ID | CQAS55 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | DTMT |
Trait Name | days to maturity |
Published Symbol | |
Trait Synonym(s) | |
Trait Category | Development |
Chromosome | 5 |
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 5 | 2,091,276-12,457,719 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Cornell 9024/LH422 RI QTL 1996 | BNL6.32 | 5 | 12.8-46.2 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
CQAS55 | 5 | 12.8 | 46.2 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RZ556 | RFLP | Oryza sativa | qtl_marker |
To | RG360 | RFLP | Oryza sativa | qtl_marker |
To | RZ296 | RFLP | Oryza sativa | qtl_marker |
To | RZ390 | RFLP | Oryza sativa | qtl_marker |
To | RG573 | RFLP | Oryza sativa | qtl_marker |
To | RZ495 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000469) | Xiao-J-H et al., 1996 (IAGP) |
Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007038) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007045) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Xiao-J-H et al., 1996 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr5 | 2,091,276 | 12,457,719 | ~160K SNPs x 20 accessions (McNally 2... | 3,942 | Search for SNPs |
chr5 | 2,091,276 | 12,457,719 | '1536 chip' - 1311 SNPs x 395 rice ac... | 29 | Search for SNPs |
chr5 | 2,091,276 | 12,457,719 | Huang X, et al, Nat Genetics 2010 Nov... | 26,748 | Search for SNPs |
chr5 | 2,091,276 | 12,457,719 | RiceDiversity 44K SNP assay, 34 trait... | 26,748 | Search for SNPs |
chr5 | 2,091,276 | 12,457,719 | RiceDiversity 44K SNP assay, 34 trait... | 834 | Search for SNPs |