QTL Accession ID | CQAS54 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | DTHD | ||||
Trait Name | days to heading | ||||
Published Symbol | |||||
Trait Synonym(s) |
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Trait Category | Development | ||||
Chromosome | 5 | ||||
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 5 | 25,606,170-28,517,842 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Cornell 9024/LH422 RI QTL 1996 | BNL6.32 | 5 | 88.9-106.2 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
CQAS54 | 5 | 88.9 | 106.2 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | CDO1083 | RFLP | Avena sativa | qtl_marker |
To | CDO1160 | RFLP | Avena sativa | qtl_marker |
To | CDO202 | RFLP | Avena sativa | qtl_marker |
To | RG480 | RFLP | Oryza sativa | qtl_marker |
To | RG697 | RFLP | Oryza sativa | qtl_marker |
To | RZ70 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000137) | Xiao-J-H et al., 1996 (IAGP) |
Plant Structure | (PO:0009049) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Xiao-J-H et al., 1996 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr5 | 25,606,170 | 28,517,842 | ~160K SNPs x 20 accessions (McNally 2... | 2,112 | Search for SNPs |
chr5 | 25,606,170 | 28,517,842 | '1536 chip' - 1311 SNPs x 395 rice ac... | 11 | Search for SNPs |
chr5 | 25,606,170 | 28,517,842 | Huang X, et al, Nat Genetics 2010 Nov... | 1,828 | Search for SNPs |
chr5 | 25,606,170 | 28,517,842 | RiceDiversity 44K SNP assay, 34 trait... | 1,828 | Search for SNPs |
chr5 | 25,606,170 | 28,517,842 | RiceDiversity 44K SNP assay, 34 trait... | 352 | Search for SNPs |