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Oryza sativa QTL "CQAS33" (spikelet density)
| QTL Accession ID | CQAS33 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | SPKDN |
| Trait Name | spikelet density |
| Published Symbol | ssd3 |
| Trait Synonym(s) | |
| Trait Category | Anatomy |
| Chromosome | 3 |
| Comments | Trait was assyed for spikelets seting density. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 1,431,898-9,845,580 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | Cornell 9024/LH422 RI QTL 1996 | BNL6.32 | 3 | 89.5-138.4 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| CQAS33 | 3 | 89.5 | 138.4 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | CDO1081 | RFLP | Avena sativa | qtl_marker |
| To | RZ16 | RFLP | Oryza sativa | qtl_marker |
| To | RZ993 | RFLP | Oryza sativa | qtl_marker |
| To | G249 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000625) | Xiao-J-H et al., 1996 (IAGP) |
| Plant Structure | (PO:0009051) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Xiao-J-H et al., 1996 (SM) |
Database Cross-References (1)
SNPs (36,627)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr3 | 1,431,898 | 9,845,580 | ~160K SNPs x 20 accessions (McNally 2... | 4,312 | Search for SNPs |
| chr3 | 1,431,898 | 9,845,580 | '1536 chip' - 1311 SNPs x 395 rice ac... | 33 | Search for SNPs |
| chr3 | 1,431,898 | 9,845,580 | Huang X, et al, Nat Genetics 2010 Nov... | 15,631 | Search for SNPs |
| chr3 | 1,431,898 | 9,845,580 | RiceDiversity 44K SNP assay, 34 trait... | 15,631 | Search for SNPs |
| chr3 | 1,431,898 | 9,845,580 | RiceDiversity 44K SNP assay, 34 trait... | 1,020 | Search for SNPs |
