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Oryza sativa QTL "CQAS124" (spikelet density)
| QTL Accession ID | CQAS124 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | SPKDN |
| Trait Name | spikelet density |
| Published Symbol | ssd10 |
| Trait Synonym(s) | |
| Trait Category | Anatomy |
| Chromosome | 10 |
| Comments | Trait was assyed for spikelets seting density. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 10 | 11,715,669-19,096,839 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | Cornell 9024/LH422 RI QTL 1996 | BNL6.32 | 10 | 0-31.1 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| CQAS124 | 10 | 0 | 31.1 |
Associated Markers (6)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RG257 | RFLP | Oryza sativa | qtl_marker |
| To | RZ892 | RFLP | Oryza sativa | qtl_marker |
| To | RZ400 | RFLP | Oryza sativa | qtl_marker |
| To | RZ561 | RFLP | Oryza sativa | qtl_marker |
| To | RZ583 | RFLP | Oryza sativa | qtl_marker |
| To | RZ811 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000625) | Xiao-J-H et al., 1996 (IAGP) |
| Plant Structure | (PO:0009051) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Xiao-J-H et al., 1996 (SM) |
Database Cross-References (1)
SNPs (32,064)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr10 | 11,715,669 | 19,096,839 | ~160K SNPs x 20 accessions (McNally 2... | 2,796 | Search for SNPs |
| chr10 | 11,715,669 | 19,096,839 | '1536 chip' - 1311 SNPs x 395 rice ac... | 30 | Search for SNPs |
| chr10 | 11,715,669 | 19,096,839 | Huang X, et al, Nat Genetics 2010 Nov... | 14,300 | Search for SNPs |
| chr10 | 11,715,669 | 19,096,839 | RiceDiversity 44K SNP assay, 34 trait... | 14,300 | Search for SNPs |
| chr10 | 11,715,669 | 19,096,839 | RiceDiversity 44K SNP assay, 34 trait... | 638 | Search for SNPs |
