QTL Accession ID | CQAR6 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | SPKDN |
Trait Name | spikelet density |
Published Symbol | |
Trait Synonym(s) | |
Trait Category | Anatomy |
Chromosome | 1 |
Comments | The trait was assayed as a measure of spikelet number per panicle length. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 28,610,781-38,281,563 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IGCAS ZYQ8/JX17 F2 QTL 1995 | BNL6.32 | 1 | 30.3-40.3 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
CQAR6 | 1 | 30.3 | 40.3 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG220 | RFLP | Oryza sativa | qtl_marker |
To | RG780 | RFLP | Oryza sativa | qtl_marker |
To | RG197 | RFLP | Oryza sativa | qtl_marker |
To | RG101 | RFLP | Oryza sativa | qtl_marker |
To | RG462 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000625) | Xu-Y et al., 1995 (IAGP) |
Plant Structure | (PO:0009051) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Xu-Y et al., 1995 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr1 | 28,610,781 | 38,281,563 | ~160K SNPs x 20 accessions (McNally 2... | 7,373 | Search for SNPs |
chr1 | 28,610,781 | 38,281,563 | '1536 chip' - 1311 SNPs x 395 rice ac... | 32 | Search for SNPs |
chr1 | 28,610,781 | 38,281,563 | Huang X, et al, Nat Genetics 2010 Nov... | 16,282 | Search for SNPs |
chr1 | 28,610,781 | 38,281,563 | RiceDiversity 44K SNP assay, 34 trait... | 16,282 | Search for SNPs |
chr1 | 28,610,781 | 38,281,563 | RiceDiversity 44K SNP assay, 34 trait... | 1,348 | Search for SNPs |