QTL Accession ID | CQAR35 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||||||||||
Trait Symbol | SPKNB | ||||||||||||||||
Trait Name | spikelet number | ||||||||||||||||
Published Symbol | |||||||||||||||||
Trait Synonym(s) |
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Trait Category | Yield | ||||||||||||||||
Chromosome | 8 | ||||||||||||||||
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 8 | 16,371,234-19,382,175 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IGCAS ZYQ8/JX17 F2 QTL 1995 | BNL6.32 | 8 | 20-30.6 cM | View Comparative Map | |||
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Name | Chromosome | Start | Stop |
---|---|---|---|
CQAR35 | 8 | 20 | 30.6 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG1034 | RFLP | Oryza sativa | qtl_marker |
To | RG28 | RFLP | Oryza sativa | qtl_marker |
To | RZ617 | RFLP | Oryza sativa | qtl_marker |
To | RG1 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000456) | Xu-Y et al., 1995 (IAGP) |
Plant Structure | (PO:0009051) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Xu-Y et al., 1995 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr8 | 16,371,234 | 19,382,175 | ~160K SNPs x 20 accessions (McNally 2... | 836 | Search for SNPs |
chr8 | 16,371,234 | 19,382,175 | '1536 chip' - 1311 SNPs x 395 rice ac... | 5 | Search for SNPs |
chr8 | 16,371,234 | 19,382,175 | Huang X, et al, Nat Genetics 2010 Nov... | 11,079 | Search for SNPs |
chr8 | 16,371,234 | 19,382,175 | RiceDiversity 44K SNP assay, 34 trait... | 11,079 | Search for SNPs |
chr8 | 16,371,234 | 19,382,175 | RiceDiversity 44K SNP assay, 34 trait... | 216 | Search for SNPs |