QTL Accession ID | CQAN9 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | DTHD | ||||
Trait Name | days to heading | ||||
Published Symbol | qHD-2 | ||||
Trait Synonym(s) |
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Trait Category | Development | ||||
Chromosome | 2 | ||||
Comments | Trait was assayed on F2 clonal population, grown in 1997. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 25,459,895-25,865,568 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IGCAS Jas85/Lem F2 QTL 2000 | BNL6.32 | 2 | 101.6-108.8 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
CQAN9 | 2 | 101.6 | 108.8 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | C424 | RFLP | Oryza sativa | qtl_marker |
To | RM263 | SSR | Oryza sativa Indica Group | qtl_marker |
To | G45 | RFLP | Oryza sativa | qtl_marker |
To | R3393 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000137) | Zou-J-H et al., 2000 (IAGP) |
Plant Structure | (PO:0009049) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Zou-J-H et al., 2000 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr2 | 25,459,895 | 25,865,568 | ~160K SNPs x 20 accessions (McNally 2... | 270 | Search for SNPs |
chr2 | 25,459,895 | 25,865,568 | '1536 chip' - 1311 SNPs x 395 rice ac... | 2 | Search for SNPs |
chr2 | 25,459,895 | 25,865,568 | Huang X, et al, Nat Genetics 2010 Nov... | 1,442 | Search for SNPs |
chr2 | 25,459,895 | 25,865,568 | RiceDiversity 44K SNP assay, 34 trait... | 1,442 | Search for SNPs |
chr2 | 25,459,895 | 25,865,568 | RiceDiversity 44K SNP assay, 34 trait... | 66 | Search for SNPs |