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Oryza sativa QTL "CQAN6" (sheath blight disease resistance)
| QTL Accession ID | CQAN6 | ||||
|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
| Trait Symbol | SHBTRS | ||||
| Trait Name | sheath blight disease resistance | ||||
| Published Symbol | qSB-9-1 | ||||
| Trait Synonym(s) |
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| Trait Category | Biotic stress | ||||
| Chromosome | 9 | ||||
| Comments | Trait was assayed on F2 clonal population, grown in 1998. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 9 | 10,799,952-12,290,440 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | IGCAS Jas85/Lem F2 QTL 2000 | BNL6.32 | 9 | 56.7-70.8 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| CQAN6 | 9 | 56.7 | 70.8 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | C397 | RFLP | Oryza sativa | qtl_marker |
| To | G103 | RFLP | Oryza sativa | qtl_marker |
| To | G385 | RFLP | Oryza sativa | qtl_marker |
| To | RZ698 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000255) | Zou-J-H et al., 2000 (IAGP) |
| Plant Structure | (PO:0020104) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| (PO:0007134) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
| (GRO:0007140) | Gramene curators, 2007 (IC) | |
| Environment | (EO:0007072) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Zou-J-H et al., 2000 (SM) |
Database Cross-References (1)
SNPs (8,182)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr9 | 10,799,952 | 12,290,440 | ~160K SNPs x 20 accessions (McNally 2... | 361 | Search for SNPs |
| chr9 | 10,799,952 | 12,290,440 | '1536 chip' - 1311 SNPs x 395 rice ac... | 7 | Search for SNPs |
| chr9 | 10,799,952 | 12,290,440 | Huang X, et al, Nat Genetics 2010 Nov... | 3,842 | Search for SNPs |
| chr9 | 10,799,952 | 12,290,440 | RiceDiversity 44K SNP assay, 34 trait... | 3,842 | Search for SNPs |
| chr9 | 10,799,952 | 12,290,440 | RiceDiversity 44K SNP assay, 34 trait... | 130 | Search for SNPs |
