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Oryza sativa QTL "CQAN4" (sheath blight disease resistance)
| QTL Accession ID | CQAN4 | ||||
|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
| Trait Symbol | SHBTRS | ||||
| Trait Name | sheath blight disease resistance | ||||
| Published Symbol | qSB-11 | ||||
| Trait Synonym(s) |
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| Trait Category | Biotic stress | ||||
| Chromosome | 11 | ||||
| Comments | Trait was assayed on F2 clonal population, grown in 1997. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 11 | 4,413,928-9,951,939 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | IGCAS Jas85/Lem F2 QTL 2000 | BNL6.32 | 11 | 96.6-119.7 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| CQAN4 | 11 | 96.6 | 119.7 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | G44 | RFLP | Oryza sativa | qtl_marker |
| To | RG118 | RFLP | Oryza sativa | qtl_marker |
| To | RG167 | RFLP | Oryza sativa | qtl_marker |
| To | RZ638 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000255) | Zou-J-H et al., 2000 (IAGP) |
| Plant Structure | (PO:0020104) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| (PO:0007134) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
| (GRO:0007140) | Gramene curators, 2007 (IC) | |
| Environment | (EO:0007072) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Zou-J-H et al., 2000 (SM) |
Database Cross-References (1)
SNPs (34,685)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr11 | 4,413,928 | 9,951,939 | ~160K SNPs x 20 accessions (McNally 2... | 1,883 | Search for SNPs |
| chr11 | 4,413,928 | 9,951,939 | '1536 chip' - 1311 SNPs x 395 rice ac... | 18 | Search for SNPs |
| chr11 | 4,413,928 | 9,951,939 | Huang X, et al, Nat Genetics 2010 Nov... | 16,175 | Search for SNPs |
| chr11 | 4,413,928 | 9,951,939 | RiceDiversity 44K SNP assay, 34 trait... | 16,175 | Search for SNPs |
| chr11 | 4,413,928 | 9,951,939 | RiceDiversity 44K SNP assay, 34 trait... | 434 | Search for SNPs |
