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Oryza sativa QTL "CQAM1" (brown planthopper resistance)
| QTL Accession ID | CQAM1 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | BPHRS |
| Trait Name | brown planthopper resistance |
| Published Symbol | |
| Trait Synonym(s) | BPH |
| Trait Category | Biotic stress |
| Chromosome | 1 |
| Comments | Brown planthopper resistance response was determined by assaying the ovipositional lesions caused by brown planthopper (Nilaparvata lugens), in terms of watery lesions, yellowish lesions and nonwatery lesions found on rice plant. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 42,953,262-42,955,596 bp | View Comparative Map | |||
|
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | JKU Aso/IR24 QTL 1996 | BNL6.32 | 1 | 0-3.1 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| CQAM1 | 1 | 0 | 3.1 |
Associated Markers (3)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | C112 | RFLP | Oryza sativa | qtl_marker |
| To | XNpb346 | RFLP | Oryza sativa | qtl_marker |
| To | G54 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000424) | Yamasaki-M et al., 2000 (IAGP) |
| Plant Structure | (PO:0009005) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007134) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007317) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Yamasaki-M et al., 2000 (SM) |
Database Cross-References (1)
SNPs (4)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr1 | 42,953,262 | 42,955,596 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
| chr1 | 42,953,262 | 42,955,596 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr1 | 42,953,262 | 42,955,596 | Huang X, et al, Nat Genetics 2010 Nov... | 2 | Search for SNPs |
| chr1 | 42,953,262 | 42,955,596 | RiceDiversity 44K SNP assay, 34 trait... | 2 | Search for SNPs |
| chr1 | 42,953,262 | 42,955,596 | RiceDiversity 44K SNP assay, 34 trait... | 0 |
