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Oryza sativa QTL "CQAK12" (days to heading)
| QTL Accession ID | CQAK12 | ||||
|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
| Trait Symbol | DTHD | ||||
| Trait Name | days to heading | ||||
| Published Symbol | Hd2 | ||||
| Trait Synonym(s) |
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| Trait Category | Development | ||||
| Chromosome | 7 | ||||
| Comments | Detected in NIL(Hd2) population. The study confirms that Hd2 is epistatic to Hd6. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 7 | 29,434,932-29,467,498 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 7 | 118.3-118.3 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| CQAK12 | 7 | 118.3 | 118.3 |
Associated Markers (11)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | C213 | RFLP | Oryza sativa | qtl_marker |
| To | C728 | RFLP | Oryza sativa | qtl_marker |
| To | SE8 | Gene | Oryza sativa | ISS |
| To | R411 | RFLP | Oryza sativa | qtl_marker |
| To | RG351 | RFLP | Oryza sativa | qtl_marker |
| To | S2267 | RFLP | Oryza sativa | qtl_marker |
| To | S1979 | RFLP | Oryza sativa | qtl_marker |
| To | S1205S | RFLP | Oryza sativa | qtl_marker |
| To | E50187S | RFLP | Oryza sativa | qtl_marker |
| To | E3029S | RFLP | Oryza sativa | qtl_marker |
| To | E933S | RFLP | Oryza sativa | qtl_marker |
Associated Genes (1)
| Species | Accession | Name | Evidence |
|---|---|---|---|
| Oryza sativa | GR:0060867 | PHOTOSENSITIVITY 8 | Yamamoto-T et al., 2000 (IAGP) |
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000137) | Yamamoto-T et al., 2000 (IAGP) |
| Plant Structure | (PO:0009049) | Yamamoto-T et al., 2000 (SM) |
| Plant Growth and Development Stage | (PO:0007130) | Yamamoto-T et al., 2000 (SM) |
| Growth Stage | (GRO:0007044) | Yamamoto-T et al., 2000 (SM) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Yamamoto-T et al., 2000 (SM) |
Database Cross-References (1)
SNPs (127)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr7 | 29,434,932 | 29,467,498 | ~160K SNPs x 20 accessions (McNally 2... | 10 | Search for SNPs |
| chr7 | 29,434,932 | 29,467,498 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr7 | 29,434,932 | 29,467,498 | Huang X, et al, Nat Genetics 2010 Nov... | 56 | Search for SNPs |
| chr7 | 29,434,932 | 29,467,498 | RiceDiversity 44K SNP assay, 34 trait... | 56 | Search for SNPs |
| chr7 | 29,434,932 | 29,467,498 | RiceDiversity 44K SNP assay, 34 trait... | 5 | Search for SNPs |
