QTL Accession ID | CQAK10 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | DTHD | ||||
Trait Name | days to heading | ||||
Published Symbol | Hd6 | ||||
Trait Synonym(s) |
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Trait Category | Development | ||||
Chromosome | 3 | ||||
Comments | Detected in NIL(Hd2/Hd6) population. The study confirms that Hd2 is epistatic to Hd6. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 31,047,520-31,198,096 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 3 | 139.6-139.6 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
CQAK10 | 3 | 139.6 | 139.6 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | V235 | RFLP | Oryza sativa | qtl_marker |
To | R2311 | RFLP | Oryza sativa | qtl_marker |
To | L154 | RFLP | Oryza sativa | qtl_marker |
To | E31254 | RFLP | Oryza sativa | qtl_marker |
To | R2628 | RFLP | Oryza sativa | qtl_marker |
To | M330 | RFLP | Zea mays subsp. mays | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000137) | Yamamoto-T et al., 2000 (IAGP) |
Plant Structure | (PO:0009049) | Yamamoto-T et al., 2000 (SM) |
Plant Growth and Development Stage | (PO:0007130) | Yamamoto-T et al., 2000 (SM) |
Growth Stage | (GRO:0007044) | Yamamoto-T et al., 2000 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Yamamoto-T et al., 2000 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr3 | 31,047,520 | 31,198,096 | ~160K SNPs x 20 accessions (McNally 2... | 39 | Search for SNPs |
chr3 | 31,047,520 | 31,198,096 | '1536 chip' - 1311 SNPs x 395 rice ac... | 1 | Search for SNPs |
chr3 | 31,047,520 | 31,198,096 | Huang X, et al, Nat Genetics 2010 Nov... | 279 | Search for SNPs |
chr3 | 31,047,520 | 31,198,096 | RiceDiversity 44K SNP assay, 34 trait... | 279 | Search for SNPs |
chr3 | 31,047,520 | 31,198,096 | RiceDiversity 44K SNP assay, 34 trait... | 8 | Search for SNPs |