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Oryza sativa QTL "CQAJ26" (grain weight)
| QTL Accession ID | CQAJ26 | ||||
|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
| Trait Symbol | GRWT | ||||
| Trait Name | grain weight | ||||
| Published Symbol | gw5a | ||||
| Trait Synonym(s) |
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| Trait Category | Quality | ||||
| Chromosome | 5 | ||||
| Comments | Detected in 1995, in the ratooned F2 population. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 5 | 2,027,827-2,029,062 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | Zh97/Ming63 CNHZAU F2 QTL 1999 | BNL6.32 | 5 | 20.4-30.2 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| CQAJ26 | 5 | 20.4 | 30.2 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | C734 | RFLP | Oryza sativa | qtl_marker |
| To | R1674 | RFLP | Oryza sativa | qtl_marker |
| To | RG360 | RFLP | Oryza sativa | qtl_marker |
| To | R830 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000589) | Li-X-H et al., 2000 (IAGP) |
| Plant Structure | (PO:0009010) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007038) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007045) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Li-X-H et al., 2000 (SM) |
Database Cross-References (1)
SNPs (2)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr5 | 2,027,827 | 2,029,062 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
| chr5 | 2,027,827 | 2,029,062 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr5 | 2,027,827 | 2,029,062 | Huang X, et al, Nat Genetics 2010 Nov... | 1 | Search for SNPs |
| chr5 | 2,027,827 | 2,029,062 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |
| chr5 | 2,027,827 | 2,029,062 | RiceDiversity 44K SNP assay, 34 trait... | 0 |
