QTL Accession ID | CQAJ20 | ||||||
---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
Trait Symbol | GRNB | ||||||
Trait Name | grain number | ||||||
Published Symbol | gp5b | ||||||
Trait Synonym(s) |
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Trait Category | Yield | ||||||
Chromosome | 5 | ||||||
Comments | Detected in 1995, in the ratooned F2 population. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 5 | 21,372,057-26,934,954 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Zh97/Ming63 CNHZAU F2 QTL 1999 | BNL6.32 | 5 | 166.8-205.3 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
CQAJ20 | 5 | 166.8 | 205.3 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | C246 | RFLP | Oryza sativa | qtl_marker |
To | C624 | RFLP | Oryza sativa | qtl_marker |
To | RM163 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RG528 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000445) | Li-X-H et al., 2000 (IAGP) |
Plant Structure | (PO:0009010) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007038) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007045) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Li-X-H et al., 2000 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr5 | 21,372,057 | 26,934,954 | ~160K SNPs x 20 accessions (McNally 2... | 3,911 | Search for SNPs |
chr5 | 21,372,057 | 26,934,954 | '1536 chip' - 1311 SNPs x 395 rice ac... | 18 | Search for SNPs |
chr5 | 21,372,057 | 26,934,954 | Huang X, et al, Nat Genetics 2010 Nov... | 6,201 | Search for SNPs |
chr5 | 21,372,057 | 26,934,954 | RiceDiversity 44K SNP assay, 34 trait... | 6,201 | Search for SNPs |
chr5 | 21,372,057 | 26,934,954 | RiceDiversity 44K SNP assay, 34 trait... | 630 | Search for SNPs |