![[Home Page]](/images/icons/gramene_logo180new.jpg "[Home Page]"){kind=icon}
QTL Home |
Simple Search |
Power Search |
Help |
Tutorial |
FAQ
Oryza sativa QTL "CQAJ1" (yield)
| QTL Accession ID | CQAJ1 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | YLD |
| Trait Name | yield |
| Published Symbol | yd7a |
| Trait Synonym(s) | |
| Trait Category | Yield |
| Chromosome | 7 |
| Comments | Detected in 1994, in the ratooned F2 population. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 7 | 2,316,691-7,232,998 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | Zh97/Ming63 CNHZAU F2 QTL 1999 | BNL6.32 | 7 | 0-38.4 cM | View Comparative Map | |||
|
||||||||
QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| CQAJ1 | 7 | 0 | 38.4 |
Associated Markers (3)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | C1023 | RFLP | Oryza sativa | qtl_marker |
| To | RG128 | RFLP | Oryza sativa | qtl_marker |
| To | R1440 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000396) | Li-X-H et al., 2000 (IAGP) |
| Plant Structure | (PO:0009001) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007038) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007045) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Li-X-H et al., 2000 (SM) |
Database Cross-References (1)
SNPs (22,760)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr7 | 2,316,691 | 7,232,998 | ~160K SNPs x 20 accessions (McNally 2... | 813 | Search for SNPs |
| chr7 | 2,316,691 | 7,232,998 | '1536 chip' - 1311 SNPs x 395 rice ac... | 8 | Search for SNPs |
| chr7 | 2,316,691 | 7,232,998 | Huang X, et al, Nat Genetics 2010 Nov... | 10,839 | Search for SNPs |
| chr7 | 2,316,691 | 7,232,998 | RiceDiversity 44K SNP assay, 34 trait... | 10,839 | Search for SNPs |
| chr7 | 2,316,691 | 7,232,998 | RiceDiversity 44K SNP assay, 34 trait... | 261 | Search for SNPs |
