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Oryza sativa QTL "CQAI25" (root number)
| QTL Accession ID | CQAI25 | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||
| Trait Symbol | RTNB | ||||||||
| Trait Name | root number | ||||||||
| Published Symbol | qTRN1-2 | ||||||||
| Trait Synonym(s) |
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| Trait Category | Vigor | ||||||||
| Chromosome | 1 | ||||||||
| Comments | Total number of roots were counted on 65th day after sowing. The plants were subjected to well watered condition by watering them every alternate day. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 14,620,467-14,626,881 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | IRRI IR64/Azu DH QTL 2003 | BNL6.32 | 1 | 29.8-43.1 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| CQAI25 | 1 | 29.8 | 43.1 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | PSR1 | RFLP | Triticum aestivum | qtl_marker |
| To | RG173 | RFLP | Oryza sativa | qtl_marker |
| To | RG532 | RFLP | Oryza sativa | qtl_marker |
| To | RZ276 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000084) | Hemamalini-G-S et al., 2000 (IAGP) |
| Plant Structure | (PO:0009005) | Hemamalini-G-S et al., 2000 (SM) |
| Plant Growth and Development Stage | (PO:0007134) | Hemamalini-G-S et al., 2000 (SM) |
| (PO:0007130) | Hemamalini-G-S et al., 2000 (SM) | |
| Growth Stage | (GRO:0007139) | Hemamalini-G-S et al., 2000 (SM) |
| (GRO:0007140) | Hemamalini-G-S et al., 2000 (SM) | |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Hemamalini-G-S et al., 2000 (SM) |
Database Cross-References (1)
SNPs (79)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr1 | 14,620,467 | 14,626,881 | ~160K SNPs x 20 accessions (McNally 2... | 19 | Search for SNPs |
| chr1 | 14,620,467 | 14,626,881 | '1536 chip' - 1311 SNPs x 395 rice ac... | 1 | Search for SNPs |
| chr1 | 14,620,467 | 14,626,881 | Huang X, et al, Nat Genetics 2010 Nov... | 27 | Search for SNPs |
| chr1 | 14,620,467 | 14,626,881 | RiceDiversity 44K SNP assay, 34 trait... | 27 | Search for SNPs |
| chr1 | 14,620,467 | 14,626,881 | RiceDiversity 44K SNP assay, 34 trait... | 5 | Search for SNPs |
