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Oryza sativa QTL "CQAI16" (tiller number)
| QTL Accession ID | CQAI16 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||||
| Trait Symbol | TINB | ||||||||||
| Trait Name | tiller number | ||||||||||
| Published Symbol | qNOT4-1 | ||||||||||
| Trait Synonym(s) |
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| Trait Category | Vigor | ||||||||||
| Chromosome | 4 | ||||||||||
| Comments | Total number of tillers were counted on 85th day after sowing. The plants were well watered up to first 65 days and were subjected to low water stress from 65-85 days after sowing. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 13,634,515-13,635,012 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | IRRI IR64/Azu DH QTL 2003 | BNL6.32 | 4 | 15.7-38 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| CQAI16 | 4 | 15.7 | 38 |
Associated Markers (5)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RG91 | RFLP | Oryza sativa | qtl_marker |
| To | RG908 | RFLP | Oryza sativa | qtl_marker |
| To | RG449 | RFLP | Oryza sativa | qtl_marker |
| To | RG190 | RFLP | Oryza sativa | qtl_marker |
| To | RG788 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (10)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000346) | Hemamalini-G-S et al., 2000 (IAGP) |
| Plant Structure | (PO:0005001) | Hemamalini-G-S et al., 2000 (SM) |
| Plant Growth and Development Stage | (PO:0007134) | Hemamalini-G-S et al., 2000 (SM) |
| (PO:0007130) | Hemamalini-G-S et al., 2000 (SM) | |
| (PO:0007073) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007139) | Hemamalini-G-S et al., 2000 (SM) |
| (GRO:0007140) | Hemamalini-G-S et al., 2000 (SM) | |
| (GRO:0007049) | Gramene curators, 2007 (IC) | |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Hemamalini-G-S et al., 2000 (SM) |
Database Cross-References (1)
SNPs (20)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr4 | 13,634,515 | 13,635,012 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
| chr4 | 13,634,515 | 13,635,012 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr4 | 13,634,515 | 13,635,012 | Huang X, et al, Nat Genetics 2010 Nov... | 10 | Search for SNPs |
| chr4 | 13,634,515 | 13,635,012 | RiceDiversity 44K SNP assay, 34 trait... | 10 | Search for SNPs |
| chr4 | 13,634,515 | 13,635,012 | RiceDiversity 44K SNP assay, 34 trait... | 0 |
