QTL Accession ID | CQAH35 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | SDDOR |
Trait Name | seed dormancy |
Published Symbol | qDOR-8-1 |
Trait Synonym(s) |
SDDOR dormancy |
Trait Category | Vigor |
Chromosome | 8 |
Comments | Seed dormancy was assessed by carrying out germination efficiency test on intact seeds (with hull) 30 days after heading. QTL was detected by both simple and composite interval mapping. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 8 | 22,885,196-22,886,866 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JNIG W1944/Peik QTL 2002 | BNL6.32 | 8 | 261.7-322.5 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
CQAH35 | 8 | 261.7 | 322.5 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | G187 | RFLP | Oryza sativa | qtl_marker |
To | RG181 | RFLP | Oryza sativa | qtl_marker |
To | G2132 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000253) | Cai-H-W et al., 2000 (IAGP) |
Plant Structure | (PO:0009010) | Cai-H-W et al., 2000 (SM) |
Plant Growth and Development Stage | (PO:0007132) | Cai-H-W et al., 2000 (SM) |
(PO:0007057) | Cai-H-W et al., 2000 (SM) | |
(PO:0007038) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007045) | Cai-H-W et al., 2000 (SM) |
(GRO:0007043) | Cai-H-W et al., 2000 (SM) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Cai-H-W et al., 2000 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr8 | 22,885,196 | 22,886,866 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr8 | 22,885,196 | 22,886,866 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr8 | 22,885,196 | 22,886,866 | Huang X, et al, Nat Genetics 2010 Nov... | 1 | Search for SNPs |
chr8 | 22,885,196 | 22,886,866 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |
chr8 | 22,885,196 | 22,886,866 | RiceDiversity 44K SNP assay, 34 trait... | 0 |