QTL Accession ID | CQAH26 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | SDDOR |
Trait Name | seed dormancy |
Published Symbol | |
Trait Synonym(s) |
SDDOR dormancy |
Trait Category | Vigor |
Chromosome | 6 |
Comments | Seed dormancy was assessed by carrying out germination efficiency test on dehulled seed grains 30 days after heading. QTL was detected by simple interval mapping. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 4,896,250-6,486,774 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JNIG W1944/Peik QTL 2002 | BNL6.32 | 6 | 116.6-137.6 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
CQAH26 | 6 | 116.6 | 137.6 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | G200 | RFLP | Oryza sativa | qtl_marker |
To | RZ588 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000253) | Cai-H-W et al., 2000 (IAGP) |
Plant Structure | (PO:0009010) | Cai-H-W et al., 2000 (SM) |
Plant Growth and Development Stage | (PO:0007132) | Cai-H-W et al., 2000 (SM) |
(PO:0007057) | Cai-H-W et al., 2000 (SM) | |
(PO:0007038) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007045) | Cai-H-W et al., 2000 (SM) |
(GRO:0007043) | Cai-H-W et al., 2000 (SM) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Cai-H-W et al., 2000 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr6 | 4,896,250 | 6,486,774 | ~160K SNPs x 20 accessions (McNally 2... | 753 | Search for SNPs |
chr6 | 4,896,250 | 6,486,774 | '1536 chip' - 1311 SNPs x 395 rice ac... | 5 | Search for SNPs |
chr6 | 4,896,250 | 6,486,774 | Huang X, et al, Nat Genetics 2010 Nov... | 5,208 | Search for SNPs |
chr6 | 4,896,250 | 6,486,774 | RiceDiversity 44K SNP assay, 34 trait... | 5,208 | Search for SNPs |
chr6 | 4,896,250 | 6,486,774 | RiceDiversity 44K SNP assay, 34 trait... | 164 | Search for SNPs |