QTL Accession ID | CQAH18 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | GRSH |
Trait Name | grain shattering |
Published Symbol | qSHT-4 |
Trait Synonym(s) | seed shattering |
Trait Category | Anatomy |
Chromosome | 4 |
Comments | Trait determined by the ease of seed shedding. QTL was detected by both simple and composite interval mapping. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 31,279,646-33,972,400 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JNIG W1944/Peik QTL 2002 | BNL6.32 | 4 | 144.1-184.4 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
CQAH18 | 4 | 144.1 | 184.4 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | CDO244 | RFLP | Avena sativa | qtl_marker |
To | R1427 | RFLP | Oryza sativa | qtl_marker |
To | RG214 | RFLP | Oryza sativa | qtl_marker |
To | G282 | RFLP | Oryza sativa | qtl_marker |
To | G271 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000473) | Cai-H-W et al., 2000 (IAGP) |
Plant Structure | (PO:0009001) | Cai-H-W et al., 2000 (SM) |
(PO:0009010) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007132) | Cai-H-W et al., 2000 (SM) |
(PO:0007057) | Cai-H-W et al., 2000 (SM) | |
(PO:0007038) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007045) | Cai-H-W et al., 2000 (SM) |
(GRO:0007043) | Cai-H-W et al., 2000 (SM) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Cai-H-W et al., 2000 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr4 | 31,279,646 | 33,972,400 | ~160K SNPs x 20 accessions (McNally 2... | 1,090 | Search for SNPs |
chr4 | 31,279,646 | 33,972,400 | '1536 chip' - 1311 SNPs x 395 rice ac... | 14 | Search for SNPs |
chr4 | 31,279,646 | 33,972,400 | Huang X, et al, Nat Genetics 2010 Nov... | 7,848 | Search for SNPs |
chr4 | 31,279,646 | 33,972,400 | RiceDiversity 44K SNP assay, 34 trait... | 7,848 | Search for SNPs |
chr4 | 31,279,646 | 33,972,400 | RiceDiversity 44K SNP assay, 34 trait... | 290 | Search for SNPs |