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Oryza sativa QTL "CQAF5" (gel consistency)
| QTL Accession ID | CQAF5 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | GELCON |
| Trait Name | gel consistency |
| Published Symbol | |
| Trait Synonym(s) | GC |
| Trait Category | Quality |
| Chromosome | 6 |
| Comments | Allele effect contributed by KDML105 parent. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 2,686,204-4,897,779 bp | View Comparative Map | |||
|
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | AGEBC KDM105/CT999 RI QTL 2000 | BNL6.32 | 6 | 37.4-38.3 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| CQAF5 | 6 | 37.4 | 38.3 |
Associated Markers (3)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RM217 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | R1962 | RFLP | Oryza sativa | qtl_marker |
| To | RZ588 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000211) | Lanceras-J-C et al., 2000 (IAGP) |
| Plant Structure | (PO:0009010) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007038) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007045) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Lanceras-J-C et al., 2000 (SM) |
Database Cross-References (1)
SNPs (12,379)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr6 | 2,686,204 | 4,897,779 | ~160K SNPs x 20 accessions (McNally 2... | 1,358 | Search for SNPs |
| chr6 | 2,686,204 | 4,897,779 | '1536 chip' - 1311 SNPs x 395 rice ac... | 14 | Search for SNPs |
| chr6 | 2,686,204 | 4,897,779 | Huang X, et al, Nat Genetics 2010 Nov... | 5,353 | Search for SNPs |
| chr6 | 2,686,204 | 4,897,779 | RiceDiversity 44K SNP assay, 34 trait... | 5,353 | Search for SNPs |
| chr6 | 2,686,204 | 4,897,779 | RiceDiversity 44K SNP assay, 34 trait... | 301 | Search for SNPs |
