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Oryza sativa QTL "CQAE1" (days to heading)
| QTL Accession ID | CQAE1 | ||||
|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
| Trait Symbol | DTHD | ||||
| Trait Name | days to heading | ||||
| Published Symbol | dth2.1 | ||||
| Trait Synonym(s) |
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| Trait Category | Development | ||||
| Chromosome | 2 | ||||
| Comments | The QTLs were interpolated on Integrated DH map based on the marker orders derived from Cornell RFLP 2001 map. The QTL was detected in BC2F2 population derived from an interspecific cross between Caiapo an upland O. sativa japonica variety from Brazil and O. rufipogon from Malaysia. Trait assayed for days to heading as number of days from seeding (sowing) until 10% of the panicles had headed. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 35,369,336-35,369,671 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 2 | 191.2-192.2 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| CQAE1 | 2 | 191.2 | 192.2 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RM207 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM266 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM48 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM498 | SSR | Oryza sativa Japonica Group | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000137) | Moncada-P et al., 2001 (IAGP) |
| Plant Structure | (PO:0009049) | Moncada-P et al., 2001 (SM) |
| Plant Growth and Development Stage | (PO:0007041) | Moncada-P et al., 2001 (SM) |
| (PO:0007130 ) | Moncada-P et al., 2001 (SM) | |
| Growth Stage | (GRO:0007044) | Moncada-P et al., 2001 (SM) |
| (GRO:0007140) | Moncada-P et al., 2001 (SM) | |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Moncada-P et al., 2001 (SM) |
Database Cross-References (2)
SNPs (7)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr2 | 35,369,336 | 35,369,671 | ~160K SNPs x 20 accessions (McNally 2... | 1 | Search for SNPs |
| chr2 | 35,369,336 | 35,369,671 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr2 | 35,369,336 | 35,369,671 | Huang X, et al, Nat Genetics 2010 Nov... | 3 | Search for SNPs |
| chr2 | 35,369,336 | 35,369,671 | RiceDiversity 44K SNP assay, 34 trait... | 3 | Search for SNPs |
| chr2 | 35,369,336 | 35,369,671 | RiceDiversity 44K SNP assay, 34 trait... | 0 |
