QTL Accession ID | CQAD7 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | ALLELPATHEF |
Trait Name | allelopathic effect |
Published Symbol | |
Trait Synonym(s) | allelopathy |
Trait Category | Biotic stress |
Chromosome | 12 |
Comments | The allelopathic effect of F3 line of rice was assessed by the percent inhibition of growth (root length) of the germinating lettuce (Lactuca sativa) seedlings, by application of water-soluble leaf extracts from rice plants at 6-leaf growth stage. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 12 | 23,517,144-27,404,906 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | NIAR PI312777/Rex F2 QTL 2001 | BNL6.32 | 12 | 0-27.4 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
CQAD7 | 12 | 0 | 27.4 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | C901 | RFLP | Oryza sativa | qtl_marker |
To | R1709 | RFLP | Oryza sativa | qtl_marker |
To | G148 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000624) | Ebana-K et al., 2001 (IAGP) |
Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
(PO:0009011) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007033) | Gramene curators, 2007 (IC) |
(PO:0009012) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
Environment | (EO:0007005) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Ebana-K et al., 2001 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr12 | 23,517,144 | 27,404,906 | ~160K SNPs x 20 accessions (McNally 2... | 1,957 | Search for SNPs |
chr12 | 23,517,144 | 27,404,906 | '1536 chip' - 1311 SNPs x 395 rice ac... | 18 | Search for SNPs |
chr12 | 23,517,144 | 27,404,906 | B-Gross/J-Yulin SNP Pi-ta study in AA... | 0 | |
chr12 | 23,517,144 | 27,404,906 | Huang X, et al, Nat Genetics 2010 Nov... | 9,392 | Search for SNPs |
chr12 | 23,517,144 | 27,404,906 | RiceDiversity 44K SNP assay, 34 trait... | 9,392 | Search for SNPs |
chr12 | 23,517,144 | 27,404,906 | RiceDiversity 44K SNP assay, 34 trait... | 380 | Search for SNPs |