QTL Accession ID | CQAB85 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | PTHT | ||||
Trait Name | plant height | ||||
Published Symbol | Ph12 | ||||
Trait Synonym(s) |
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Trait Category | Vigor | ||||
Chromosome | 12 | ||||
Comments | The trait plant height was measured from soil surface to the tip of plant. Determined when the plant growth stage was between 20-10 days after transplanting. Measured on 5 central plants of each plot. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 12 | 23,603,156-23,603,428 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Zejiang IR64/Azu DH QTL 2001 | BNL6.32 | 12 | 86-87.1 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
CQAB85 | 12 | 86 | 87.1 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | CDO344 | RFLP | Avena sativa | qtl_marker |
To | RG901 | RFLP | Oryza sativa | qtl_marker |
To | RG463 | RFLP | Oryza sativa | qtl_marker |
To | RG958 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000207) | Cao-G et al., 2001 (IAGP) |
Plant Structure | (PO:0009006) | Cao-G et al., 2001 (SM) |
Plant Growth and Development Stage | (PO:0007134) | Cao-G et al., 2001 (SM) |
(PO:0007130) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Cao-G et al., 2001 (SM) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Cao-G et al., 2001 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr12 | 23,603,156 | 23,603,428 | ~160K SNPs x 20 accessions (McNally 2... | 1 | Search for SNPs |
chr12 | 23,603,156 | 23,603,428 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr12 | 23,603,156 | 23,603,428 | B-Gross/J-Yulin SNP Pi-ta study in AA... | 0 | |
chr12 | 23,603,156 | 23,603,428 | Huang X, et al, Nat Genetics 2010 Nov... | 0 | |
chr12 | 23,603,156 | 23,603,428 | RiceDiversity 44K SNP assay, 34 trait... | 0 | |
chr12 | 23,603,156 | 23,603,428 | RiceDiversity 44K SNP assay, 34 trait... | 0 |