QTL Accession ID | CQA34 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | VGTM |
Trait Name | vegetative growth time |
Published Symbol | QTL11a |
Trait Synonym(s) | |
Trait Category | Development |
Chromosome | 11 |
Comments | The trait VGTM, is defined as the number of days spent in the vegetative growth stage by the plant. This growth phase also contributes to the total number of days to heading. The QTL was detected by Multiple-trait Composite Interval Mapping (MCIM). As concluded by the author, the QTLs on chr-11, were not significant in either of the stepwise regression analysis. They were therefore considered to be false positive and thus discarded. However, Gramene has included these QTLs in their curated maps with a word of caution. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 11 | 24,199,089-24,200,737 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | FAUF Gui630/Twj DH QTL 2001 | BNL6.32 | 11 | 112.8-112.8 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
CQA34 | 11 | 112.8 | 112.8 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | G1465 | RFLP | Oryza sativa | qtl_marker |
To | RG1109 | RFLP | Oryza sativa | qtl_marker |
To | G389 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000369) | Zhou-Y et al., 2001 (IAGP) |
Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007134) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Zhou-Y et al., 2001 (SM) |