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Oryza sativa QTL "CQA1" (days to heading)
| QTL Accession ID | CQA1 | ||||
|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
| Trait Symbol | DTHD | ||||
| Trait Name | days to heading | ||||
| Published Symbol | QTL2a | ||||
| Trait Synonym(s) |
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| Trait Category | Development | ||||
| Chromosome | 2 | ||||
| Comments | Trait assayed for heading time (HT) defined as the days from sowing to heading. QTL was detected by Composite Interval Mapping (CIM). |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 6,119,234-7,537,671 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | FAUF Gui630/Twj DH QTL 2001 | BNL6.32 | 2 | 43-43 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| CQA1 | 2 | 43 | 43 |
Associated Markers (2)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | R2164 | RFLP | Oryza sativa | qtl_marker |
| To | G227 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000137) | Zhou-Y et al., 2001 (IAGP) |
| Plant Structure | (PO:0009049) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Zhou-Y et al., 2001 (SM) |
Database Cross-References (1)
SNPs (6,598)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr2 | 6,119,234 | 7,537,671 | ~160K SNPs x 20 accessions (McNally 2... | 662 | Search for SNPs |
| chr2 | 6,119,234 | 7,537,671 | '1536 chip' - 1311 SNPs x 395 rice ac... | 8 | Search for SNPs |
| chr2 | 6,119,234 | 7,537,671 | Huang X, et al, Nat Genetics 2010 Nov... | 2,891 | Search for SNPs |
| chr2 | 6,119,234 | 7,537,671 | RiceDiversity 44K SNP assay, 34 trait... | 2,891 | Search for SNPs |
| chr2 | 6,119,234 | 7,537,671 | RiceDiversity 44K SNP assay, 34 trait... | 146 | Search for SNPs |
