QTL Accession ID | AQZ005 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | RELRTLG |
Trait Name | relative root length |
Published Symbol | QAlRr1.1 |
Trait Synonym(s) | |
Trait Category | Abiotic stress |
Chromosome | 1 |
Comments | Root length ratio: root length under aluminum stress over control conditions. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 31,848,712-31,849,256 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | TTU IR64/Orufi RI QTL 2003 | BNL6.32 | 1a | 25.1-31.6 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQZ005 | 1 | 25.1 | 31.6 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG406 | RFLP | Oryza sativa | qtl_marker |
To | RZ252 | RFLP | Oryza sativa | qtl_marker |
To | RM315 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM237 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000516) | Nguyen-B-D et al., 2003 (IAGP) |
Plant Structure | (PO:0009005) | Nguyen-B-D et al., 2003 (SM) |
Plant Growth and Development Stage | (PO:0007134) | Nguyen-B-D et al., 2003 (SM) |
(PO:0007130) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Nguyen-B-D et al., 2003 (SM) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Nguyen-B-D et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr1 | 31,848,712 | 31,849,256 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr1 | 31,848,712 | 31,849,256 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr1 | 31,848,712 | 31,849,256 | Huang X, et al, Nat Genetics 2010 Nov... | 1 | Search for SNPs |
chr1 | 31,848,712 | 31,849,256 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |
chr1 | 31,848,712 | 31,849,256 | RiceDiversity 44K SNP assay, 34 trait... | 0 |