QTL Accession ID | AQY011 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | DTHD | ||||
Trait Name | days to heading | ||||
Published Symbol | hd6 | ||||
Trait Synonym(s) |
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Trait Category | Development | ||||
Chromosome | 6 | ||||
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 2,260,721-3,536,853 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNHZAU Zh97/Ming63 RI QTL 2002 | BNL6.32 | 6 | 18.5-49 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQY011 | 6 | 18.5 | 49 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | R1952 | RFLP | Oryza sativa | qtl_marker |
To | R2749 | RFLP | Oryza sativa | qtl_marker |
To | R1962 | RFLP | Oryza sativa | qtl_marker |
To | C1368 | RFLP | Oryza sativa | qtl_marker |
To | C764 | RFLP | Oryza sativa | qtl_marker |
To | RM225 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM204 | SSR | Oryza sativa Indica Group | qtl_marker |
To | C226 | RFLP | Oryza sativa | qtl_marker |
To | C688 | RFLP | Oryza sativa | qtl_marker |
To | RZ398 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000137) | Yu-S-B et al., 2002 (IAGP) |
Plant Structure | (PO:0009049) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Yu-S-B et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr6 | 2,260,721 | 3,536,853 | ~160K SNPs x 20 accessions (McNally 2... | 1,125 | Search for SNPs |
chr6 | 2,260,721 | 3,536,853 | '1536 chip' - 1311 SNPs x 395 rice ac... | 8 | Search for SNPs |
chr6 | 2,260,721 | 3,536,853 | Huang X, et al, Nat Genetics 2010 Nov... | 2,666 | Search for SNPs |
chr6 | 2,260,721 | 3,536,853 | RiceDiversity 44K SNP assay, 34 trait... | 2,666 | Search for SNPs |
chr6 | 2,260,721 | 3,536,853 | RiceDiversity 44K SNP assay, 34 trait... | 210 | Search for SNPs |