QTL Accession ID | AQX009 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | SBRNB | ||||
Trait Name | secondary branch | ||||
Published Symbol | qNSB3 | ||||
Trait Synonym(s) |
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Trait Category | Anatomy | ||||
Chromosome | 3 | ||||
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 30,105,522-33,437,791 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JNIAR Aki/Kosh DH QTL 2003 | BNL6.32 | 3 | 178.7-200.7 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQX009 | 3 | 178.7 | 200.7 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | R2462 | RFLP | Oryza sativa | qtl_marker |
To | C393 | RFLP | Oryza sativa | qtl_marker |
To | C1402 | RFLP | Oryza sativa | qtl_marker |
To | C1484 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000557) | Yamagishi-M et al., 2002 (IAGP) |
Plant Structure | (PO:0006322) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Yamagishi-M et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr3 | 30,105,522 | 33,437,791 | ~160K SNPs x 20 accessions (McNally 2... | 2,015 | Search for SNPs |
chr3 | 30,105,522 | 33,437,791 | '1536 chip' - 1311 SNPs x 395 rice ac... | 11 | Search for SNPs |
chr3 | 30,105,522 | 33,437,791 | Huang X, et al, Nat Genetics 2010 Nov... | 7,282 | Search for SNPs |
chr3 | 30,105,522 | 33,437,791 | RiceDiversity 44K SNP assay, 34 trait... | 7,282 | Search for SNPs |
chr3 | 30,105,522 | 33,437,791 | RiceDiversity 44K SNP assay, 34 trait... | 354 | Search for SNPs |