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Oryza sativa QTL "AQW003" (bacterial blight disease resistance)
| QTL Accession ID | AQW003 | ||||
|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
| Trait Symbol | BBRS | ||||
| Trait Name | bacterial blight disease resistance | ||||
| Published Symbol | qBB3-2 | ||||
| Trait Synonym(s) |
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| Trait Category | Biotic stress | ||||
| Chromosome | 3 | ||||
| Comments |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 23,088,332-28,232,092 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | IRRI IR64/Azu DH QTL 2003 | BNL6.32 | 3 | 135.9-135.9 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQW003 | 3 | 135.9 | 135.9 |
Associated Markers (2)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RZ403 | RFLP | Oryza sativa | qtl_marker |
| To | CDO337 | RFLP | Avena sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (11)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000175) | Ramalingam-J et al., 2003 (IAGP) |
| Plant Structure | (PO:0009025) | Ramalingam-J et al., 2003 (SM) |
| (PO:0000003) | Gramene curators, 2007 (IC) | |
| (PO:0009011) | Gramene curators, 2007 (IC) | |
| Plant Growth and Development Stage | (PO:0007110 ) | Ramalingam-J et al., 2003 (SM) |
| (PO:0007033) | Gramene curators, 2007 (IC) | |
| (PO:0009012) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007049) | Ramalingam-J et al., 2003 (SM) |
| (GRO:0007001) | Gramene curators, 2007 (IC) | |
| Environment | (EO:0007246) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Ramalingam-J et al., 2003 (SM) |
Database Cross-References (1)
SNPs (28,864)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr3 | 23,088,332 | 28,232,092 | ~160K SNPs x 20 accessions (McNally 2... | 2,524 | Search for SNPs |
| chr3 | 23,088,332 | 28,232,092 | '1536 chip' - 1311 SNPs x 395 rice ac... | 16 | Search for SNPs |
| chr3 | 23,088,332 | 28,232,092 | Huang X, et al, Nat Genetics 2010 Nov... | 12,689 | Search for SNPs |
| chr3 | 23,088,332 | 28,232,092 | RiceDiversity 44K SNP assay, 34 trait... | 12,689 | Search for SNPs |
| chr3 | 23,088,332 | 28,232,092 | RiceDiversity 44K SNP assay, 34 trait... | 946 | Search for SNPs |
