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Oryza sativa QTL "AQU028" (submergence sensitivity)
| QTL Accession ID | AQU028 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | SUBSN |
| Trait Name | submergence sensitivity |
| Published Symbol | |
| Trait Synonym(s) |
submergence tolerance submergence tolerance score |
| Trait Category | Abiotic stress |
| Chromosome | 9 |
| Comments |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 9 | 5,870,068-6,016,329 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | TKU Integrated QTL 2002 | BNL6.32 | 9 | 29.7-29.7 cM | View Comparative Map | |||
|
||||||||
QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQU028 | 9 | 29.7 | 29.7 |
Associated Markers (5)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | S10709 | RFLP | Oryza sativa | qtl_marker |
| To | R1164 | RFLP | Oryza sativa | qtl_marker |
| To | RG757 | RFLP | Oryza sativa | qtl_marker |
| To | RM41 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RZ698 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000286) | Toojinda-T et al., 2003 (IAGP) |
| Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
| (PO:0009011) | Gramene curators, 2007 (IC) | |
| Plant Growth and Development Stage | (PO:0007033) | Gramene curators, 2007 (IC) |
| (PO:0009012) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007164) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Toojinda-T et al., 2003 (SM) |
Database Cross-References (1)
SNPs (418)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr9 | 5,870,068 | 6,016,329 | ~160K SNPs x 20 accessions (McNally 2... | 71 | Search for SNPs |
| chr9 | 5,870,068 | 6,016,329 | '1536 chip' - 1311 SNPs x 395 rice ac... | 1 | Search for SNPs |
| chr9 | 5,870,068 | 6,016,329 | Huang X, et al, Nat Genetics 2010 Nov... | 163 | Search for SNPs |
| chr9 | 5,870,068 | 6,016,329 | RiceDiversity 44K SNP assay, 34 trait... | 163 | Search for SNPs |
| chr9 | 5,870,068 | 6,016,329 | RiceDiversity 44K SNP assay, 34 trait... | 20 | Search for SNPs |
