QTL Accession ID | AQT022 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | SDTH |
Trait Name | seed thickness |
Published Symbol | |
Trait Synonym(s) | |
Trait Category | Quality |
Chromosome | 4 |
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 26,857,374-26,857,637 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JHPRC Rei/Yamd QTL 2002 | BNL6.32 | 4 | 129.6-136.2 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQT022 | 4 | 129.6 | 136.2 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | E091288 | RFLP | Oryza sativa | qtl_marker |
To | G13663 | RFLP | Oryza sativa | qtl_marker |
To | RM241 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000304) | Yoshida-S et al., 2002 (IAGP) |
Plant Structure | (PO:0009010) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007038) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007045) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Yoshida-S et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr4 | 26,857,374 | 26,857,637 | ~160K SNPs x 20 accessions (McNally 2... | 1 | Search for SNPs |
chr4 | 26,857,374 | 26,857,637 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr4 | 26,857,374 | 26,857,637 | Huang X, et al, Nat Genetics 2010 Nov... | 0 | |
chr4 | 26,857,374 | 26,857,637 | RiceDiversity 44K SNP assay, 34 trait... | 0 | |
chr4 | 26,857,374 | 26,857,637 | RiceDiversity 44K SNP assay, 34 trait... | 0 |