QTL Accession ID | AQT012 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||||
Trait Symbol | TSDWT | ||||||||||
Trait Name | 1000-seed weight | ||||||||||
Published Symbol | |||||||||||
Trait Synonym(s) |
|
||||||||||
Trait Category | Yield | ||||||||||
Chromosome | 11 | ||||||||||
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 11 | 2,840,211-2,840,381 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JHPRC Rei/Yamd QTL 2002 | BNL6.32 | 11 | 0-32.5 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQT012 | 11 | 0 | 32.5 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM332 | SSR | Oryza sativa Indica Group | qtl_marker |
To | B01482 | RFLP | Hordeum vulgare | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000382) | Yoshida-S et al., 2002 (IAGP) |
Plant Structure | (PO:0009010) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007038) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007045) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Yoshida-S et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr11 | 2,840,211 | 2,840,381 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr11 | 2,840,211 | 2,840,381 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr11 | 2,840,211 | 2,840,381 | Huang X, et al, Nat Genetics 2010 Nov... | 2 | Search for SNPs |
chr11 | 2,840,211 | 2,840,381 | RiceDiversity 44K SNP assay, 34 trait... | 2 | Search for SNPs |
chr11 | 2,840,211 | 2,840,381 | RiceDiversity 44K SNP assay, 34 trait... | 0 |