QTL Accession ID | AQT006 | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||||||
Trait Symbol | PNNB | ||||||||||||
Trait Name | panicle number | ||||||||||||
Published Symbol | |||||||||||||
Trait Synonym(s) |
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Trait Category | Yield | ||||||||||||
Chromosome | 11 | ||||||||||||
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 11 | 22,014,679-22,014,851 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JHPRC Rei/Yamd QTL 2002 | BNL6.32 | 11 | 104.1-118.2 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQT006 | 11 | 104.1 | 118.2 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM206 | SSR | Oryza sativa Indica Group | qtl_marker |
To | B151084 | RFLP | Hordeum vulgare | qtl_marker |
To | RM21 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000152) | Yoshida-S et al., 2002 (IAGP) |
Plant Structure | (PO:0009049) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Yoshida-S et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr11 | 22,014,679 | 22,014,851 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr11 | 22,014,679 | 22,014,851 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr11 | 22,014,679 | 22,014,851 | Huang X, et al, Nat Genetics 2010 Nov... | 1 | Search for SNPs |
chr11 | 22,014,679 | 22,014,851 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |
chr11 | 22,014,679 | 22,014,851 | RiceDiversity 44K SNP assay, 34 trait... | 0 |