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Oryza sativa QTL "AQR033" (rooting depth)
| QTL Accession ID | AQR033 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | RTDP |
| Trait Name | rooting depth |
| Published Symbol | |
| Trait Synonym(s) | |
| Trait Category | Abiotic stress |
| Chromosome | 2 |
| Comments |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 17,040,590-17,043,505 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | CTIR CT9993/IR6226 QTL 2000 | BNL6.32 | 2 | 34.5-40.6 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQR033 | 2 | 34.5 | 40.6 |
Associated Markers (3)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RG437 | RFLP | Oryza sativa | qtl_marker |
| To | R1843 | RFLP | Oryza sativa | qtl_marker |
| To | C106 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000519) | Kamoshita-A et al., 2002 (IAGP) |
| Plant Structure | (PO:0009005) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| (PO:0007134) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
| (GRO:0007140) | Gramene curators, 2007 (IC) | |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Kamoshita-A et al., 2002 (SM) |
Database Cross-References (1)
SNPs (8)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr2 | 17,040,590 | 17,043,505 | ~160K SNPs x 20 accessions (McNally 2... | 1 | Search for SNPs |
| chr2 | 17,040,590 | 17,043,505 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr2 | 17,040,590 | 17,043,505 | Huang X, et al, Nat Genetics 2010 Nov... | 3 | Search for SNPs |
| chr2 | 17,040,590 | 17,043,505 | RiceDiversity 44K SNP assay, 34 trait... | 3 | Search for SNPs |
| chr2 | 17,040,590 | 17,043,505 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |
