QTL Accession ID | AQR028 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | DRTDWT | ||||
Trait Name | deep root dry weight | ||||
Published Symbol | |||||
Trait Synonym(s) |
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Trait Category | Abiotic stress | ||||
Chromosome | 4 | ||||
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 31,065,233-31,663,326 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CTIR CT9993/IR6226 QTL 2000 | BNL6.32 | 4 | 97.3-100.8 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQR028 | 4 | 97.3 | 100.8 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG476 | RFLP | Oryza sativa | qtl_marker |
To | RG214 | RFLP | Oryza sativa | qtl_marker |
To | RG939 | RFLP | Oryza sativa | qtl_marker |
To | RG620 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000081) | Kamoshita-A et al., 2002 (IAGP) |
Plant Structure | (PO:0009005) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Kamoshita-A et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr4 | 31,065,233 | 31,663,326 | ~160K SNPs x 20 accessions (McNally 2... | 352 | Search for SNPs |
chr4 | 31,065,233 | 31,663,326 | '1536 chip' - 1311 SNPs x 395 rice ac... | 6 | Search for SNPs |
chr4 | 31,065,233 | 31,663,326 | Huang X, et al, Nat Genetics 2010 Nov... | 1,683 | Search for SNPs |
chr4 | 31,065,233 | 31,663,326 | RiceDiversity 44K SNP assay, 34 trait... | 1,683 | Search for SNPs |
chr4 | 31,065,233 | 31,663,326 | RiceDiversity 44K SNP assay, 34 trait... | 100 | Search for SNPs |