QTL Accession ID | AQR024 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | DRTSHRO |
Trait Name | deep root to shoot ratio |
Published Symbol | |
Trait Synonym(s) | deep root ratio |
Trait Category | Abiotic stress |
Chromosome | 11 |
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 11 | 19,565,059-22,014,851 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CTIR CT9993/IR6226 QTL 2000 | BNL6.32 | 11 | 71.5-73.5 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQR024 | 11 | 71.5 | 73.5 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | CDO365 | RFLP | Avena sativa | qtl_marker |
To | RM206 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000092) | Kamoshita-A et al., 2002 (IAGP) |
Plant Structure | (PO:0009005) | Gramene curators, 2007 (IC) |
(PO:0009006) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Kamoshita-A et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr11 | 19,565,059 | 22,014,851 | ~160K SNPs x 20 accessions (McNally 2... | 925 | Search for SNPs |
chr11 | 19,565,059 | 22,014,851 | '1536 chip' - 1311 SNPs x 395 rice ac... | 13 | Search for SNPs |
chr11 | 19,565,059 | 22,014,851 | Huang X, et al, Nat Genetics 2010 Nov... | 8,982 | Search for SNPs |
chr11 | 19,565,059 | 22,014,851 | RiceDiversity 44K SNP assay, 34 trait... | 8,982 | Search for SNPs |
chr11 | 19,565,059 | 22,014,851 | RiceDiversity 44K SNP assay, 34 trait... | 488 | Search for SNPs |