QTL Accession ID | AQP017 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | PDTDIA |
Trait Name | peduncle top diameter |
Published Symbol | qPTD-12 |
Trait Synonym(s) | |
Trait Category | Anatomy |
Chromosome | 12 |
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 12 | 24,487,487-24,488,366 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IGCN ZYQ18/JX17 DH QTL 1998 | BNL6.32 | 12 | 41.9-62.5 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQP017 | 12 | 41.9 | 62.5 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | G148 | RFLP | Oryza sativa | qtl_marker |
To | RG651 | RFLP | Oryza sativa | qtl_marker |
To | RG413 | RFLP | Oryza sativa | qtl_marker |
To | RG463 | RFLP | Oryza sativa | qtl_marker |
To | G2140 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000546) | Teng-S et al., 2002 (IAGP) |
Plant Structure | (PO:0009053) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Teng-S et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr12 | 24,487,487 | 24,488,366 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr12 | 24,487,487 | 24,488,366 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr12 | 24,487,487 | 24,488,366 | B-Gross/J-Yulin SNP Pi-ta study in AA... | 0 | |
chr12 | 24,487,487 | 24,488,366 | Huang X, et al, Nat Genetics 2010 Nov... | 8 | Search for SNPs |
chr12 | 24,487,487 | 24,488,366 | RiceDiversity 44K SNP assay, 34 trait... | 8 | Search for SNPs |
chr12 | 24,487,487 | 24,488,366 | RiceDiversity 44K SNP assay, 34 trait... | 0 |