QTL Accession ID | AQP013 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | PDTDIA |
Trait Name | peduncle top diameter |
Published Symbol | qPTD-2 |
Trait Synonym(s) | |
Trait Category | Anatomy |
Chromosome | 2 |
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 22,595,831-25,463,717 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IGCN ZYQ18/JX17 DH QTL 1998 | BNL6.32 | 2 | 78.1-91.5 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQP013 | 2 | 78.1 | 91.5 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | C424 | RFLP | Oryza sativa | qtl_marker |
To | G45 | RFLP | Oryza sativa | qtl_marker |
To | RM263 | SSR | Oryza sativa Indica Group | qtl_marker |
To | G1314 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000546) | Teng-S et al., 2002 (IAGP) |
Plant Structure | (PO:0009053) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Teng-S et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr2 | 22,595,831 | 25,463,717 | ~160K SNPs x 20 accessions (McNally 2... | 2,070 | Search for SNPs |
chr2 | 22,595,831 | 25,463,717 | '1536 chip' - 1311 SNPs x 395 rice ac... | 18 | Search for SNPs |
chr2 | 22,595,831 | 25,463,717 | Huang X, et al, Nat Genetics 2010 Nov... | 8,682 | Search for SNPs |
chr2 | 22,595,831 | 25,463,717 | RiceDiversity 44K SNP assay, 34 trait... | 8,682 | Search for SNPs |
chr2 | 22,595,831 | 25,463,717 | RiceDiversity 44K SNP assay, 34 trait... | 484 | Search for SNPs |