Oryza sativa QTL "AQP011" (spikelet number)

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Oryza sativa QTL "AQP011" (spikelet number)

QTL Accession ID

AQP011

Species

Oryza sativa (Rice) [ GR_tax:013681 ]

Trait Symbol

SPKNB

Trait Name

spikelet number

Published Symbol

qSPN-4b

Trait Synonym(s)

NSS	SN	SP	TNS
TSN	average number of spikelets on one secondary branch	number of spikelets on primary branch	number of spikelets on second branch
number of spikelets per panicle	spikelet per panicle	spikelets on primary branch per panicle	spikelets on secondary branch per panicle
spikelets per primary branch	total spikelets per panicle

Trait Category

Yield

Chromosome

Comments

Map Positions (2)

Oryza sativa Japonica Group (1)

Map Type

Map Set

Name

Map

Position

Ext. Links

Sequence

Gramene Annotated Nipponbare Sequence 2009

BNL6.32

Chr. 4

22,349,484-26,857,637 bp

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Details

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Oryza sativa (1)

Map Type

Map Set

Name

Map

Position

Ext. Links

QTL

IGCN ZYQ18/JX17 DH QTL 1998

BNL6.32

72.6-72.6 cM

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Details

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QTL DB Map Position (1)

Name	Chromosome	Start	Stop
AQP011	4	72.6	72.6

Associated Markers (3)

Direction	Name	Type	Species	Assoc. Type
To	CT500	SSR	Oryza sativa	qtl_marker
To	RM241	SSR	Oryza sativa Indica Group	qtl_marker
To	C513	RFLP	Oryza sativa	qtl_marker

Associated Genes (0)

Associated Ontologies (6)

Term Type	Term	Evidence
Trait Ontology	(TO:0000456)	Teng-S et al., 2002 (IAGP)
Plant Structure	(PO:0009051)	Gramene curators, 2007 (IC)
Plant Growth and Development Stage	(PO:0007130)	Gramene curators, 2007 (IC)
Growth Stage	(GRO:0007044)	Gramene curators, 2007 (IC)
Environment	(EO:0007403)	Gramene curators, 2007 (IC)
Species Ontology	(GR_tax:013681)	Teng-S et al., 2002 (SM)

Database Cross-References (1)

Gramene Literature	Teng-S, Qian-Q, Zeng-D, Kunihiro-Y, Huang-D, Zhu-L, "QTL analysis of rice peduncle vascular bundle system and panicle traits.", Acta-Botanica-Sinica, 2002, vol. 44, pp. 301-306

SNPs (17,331)

Chr	Start	Stop	Exp	Num. SNP Positions
chr4	22,349,484	26,857,637	~160K SNPs x 20 accessions (McNally 2...	1,297	Search for SNPs
chr4	22,349,484	26,857,637	'1536 chip' - 1311 SNPs x 395 rice ac...	6	Search for SNPs
chr4	22,349,484	26,857,637	Huang X, et al, Nat Genetics 2010 Nov...	7,863	Search for SNPs
chr4	22,349,484	26,857,637	RiceDiversity 44K SNP assay, 34 trait...	7,863	Search for SNPs
chr4	22,349,484	26,857,637	RiceDiversity 44K SNP assay, 34 trait...	302	Search for SNPs