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Oryza sativa QTL "AQP009" (primary branch)
| QTL Accession ID | AQP009 | ||||||
|---|---|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
| Trait Symbol | PBRNB | ||||||
| Trait Name | primary branch | ||||||
| Published Symbol | qPRB-7 | ||||||
| Trait Synonym(s) |
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| Trait Category | Anatomy | ||||||
| Chromosome | 7 | ||||||
| Comments | Primary branch number per panicle was measured and used for QTL analysis. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 7 | 17,525,817-17,526,843 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | IGCN ZYQ18/JX17 DH QTL 1998 | BNL6.32 | 7 | 74-85.7 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQP009 | 7 | 74 | 85.7 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | G20 | RFLP | Oryza sativa | qtl_marker |
| To | RM2 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | CT369 | SSR | Oryza sativa | qtl_marker |
| To | RM214 | SSR | Oryza sativa Indica Group | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000547) | Teng-S et al., 2002 (IAGP) |
| Plant Structure | (PO:0006321) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Teng-S et al., 2002 (SM) |
Database Cross-References (1)
SNPs (14)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr7 | 17,525,817 | 17,526,843 | ~160K SNPs x 20 accessions (McNally 2... | 3 | Search for SNPs |
| chr7 | 17,525,817 | 17,526,843 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr7 | 17,525,817 | 17,526,843 | Huang X, et al, Nat Genetics 2010 Nov... | 5 | Search for SNPs |
| chr7 | 17,525,817 | 17,526,843 | RiceDiversity 44K SNP assay, 34 trait... | 5 | Search for SNPs |
| chr7 | 17,525,817 | 17,526,843 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |
