QTL Accession ID | AQP007 | ||||||
---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
Trait Symbol | PBRNB | ||||||
Trait Name | primary branch | ||||||
Published Symbol | qPRB-4b | ||||||
Trait Synonym(s) |
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Trait Category | Anatomy | ||||||
Chromosome | 4 | ||||||
Comments | Primary branch number per panicle was measured and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 20,171,917-22,355,854 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IGCN ZYQ18/JX17 DH QTL 1998 | BNL6.32 | 4 | 85.7-105.5 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQP007 | 4 | 85.7 | 105.5 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | C513 | RFLP | Oryza sativa | qtl_marker |
To | G271 | RFLP | Oryza sativa | qtl_marker |
To | CT500 | SSR | Oryza sativa | qtl_marker |
To | C975 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000547) | Teng-S et al., 2002 (IAGP) |
Plant Structure | (PO:0006321) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Teng-S et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr4 | 20,171,917 | 22,355,854 | ~160K SNPs x 20 accessions (McNally 2... | 1,292 | Search for SNPs |
chr4 | 20,171,917 | 22,355,854 | '1536 chip' - 1311 SNPs x 395 rice ac... | 12 | Search for SNPs |
chr4 | 20,171,917 | 22,355,854 | Huang X, et al, Nat Genetics 2010 Nov... | 5,619 | Search for SNPs |
chr4 | 20,171,917 | 22,355,854 | RiceDiversity 44K SNP assay, 34 trait... | 5,619 | Search for SNPs |
chr4 | 20,171,917 | 22,355,854 | RiceDiversity 44K SNP assay, 34 trait... | 261 | Search for SNPs |