QTL Accession ID | AQJ010 | ||||||
---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
Trait Symbol | SDWT | ||||||
Trait Name | seed weight | ||||||
Published Symbol | |||||||
Trait Synonym(s) |
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Trait Category | Yield | ||||||
Chromosome | 10 | ||||||
Comments | QTL identified from aerobic experiments of 1980-1985. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 10 | 11,715,669-16,622,241 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 10 | 33.2-58.3 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQJ010 | 10 | 33.2 | 58.3 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG257 | RFLP | Oryza sativa | qtl_marker |
To | RM467 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM596 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RZ625 | RFLP | Oryza sativa | qtl_marker |
To | RG241 | RFLP | Oryza sativa | qtl_marker |
To | RM184 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | G1084 | RFLP | Oryza sativa | qtl_marker |
To | RM271 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000181) | Lafitte-H-R et al., 2002 (IAGP) |
Plant Structure | (PO:0009010) | Lafitte-H-R et al., 2002 (SM) |
Plant Growth and Development Stage | (PO:0007038 ) | Lafitte-H-R et al., 2002 (SM) |
Growth Stage | (GRO:0007045) | Lafitte-H-R et al., 2002 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Lafitte-H-R et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr10 | 11,715,669 | 16,622,241 | ~160K SNPs x 20 accessions (McNally 2... | 1,495 | Search for SNPs |
chr10 | 11,715,669 | 16,622,241 | '1536 chip' - 1311 SNPs x 395 rice ac... | 17 | Search for SNPs |
chr10 | 11,715,669 | 16,622,241 | Huang X, et al, Nat Genetics 2010 Nov... | 10,430 | Search for SNPs |
chr10 | 11,715,669 | 16,622,241 | RiceDiversity 44K SNP assay, 34 trait... | 10,430 | Search for SNPs |
chr10 | 11,715,669 | 16,622,241 | RiceDiversity 44K SNP assay, 34 trait... | 368 | Search for SNPs |