QTL Accession ID | AQJ008 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | SPKST |
Trait Name | spikelet sterility |
Published Symbol | |
Trait Synonym(s) |
PSS percent spikelet sterility |
Trait Category | Sterility or fertility |
Chromosome | 1 |
Comments | QTL identified from aerobic experiments of 1980-1985. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 34,032,918-40,700,598 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 1 | 154.8-188.7 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQJ008 | 1 | 154.8 | 188.7 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM226 | SSR | Oryza sativa | qtl_marker |
To | RZ730 | RFLP | Oryza sativa | qtl_marker |
To | RM265 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM315 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM472 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM431 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM104 | SSR | Oryza sativa | qtl_marker |
To | OSR23 | SSR | Oryza sativa | qtl_marker |
To | RG810 | RFLP | Oryza sativa | qtl_marker |
To | RM486 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RZ801 | RFLP | Oryza sativa | qtl_marker |
To | RM529 | SSR | Oryza sativa Japonica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000436) | Lafitte-H-R et al., 2002 (IAGP) |
Plant Structure | (PO:0009051) | Lafitte-H-R et al., 2002 (SM) |
Plant Growth and Development Stage | (PO:0007041) | Lafitte-H-R et al., 2002 (SM) |
(PO:0007130) | Lafitte-H-R et al., 2002 (SM) | |
Growth Stage | (GRO:0007044) | Lafitte-H-R et al., 2002 (SM) |
(GRO:0007140) | Lafitte-H-R et al., 2002 (SM) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Lafitte-H-R et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr1 | 34,032,918 | 40,700,598 | ~160K SNPs x 20 accessions (McNally 2... | 4,737 | Search for SNPs |
chr1 | 34,032,918 | 40,700,598 | '1536 chip' - 1311 SNPs x 395 rice ac... | 22 | Search for SNPs |
chr1 | 34,032,918 | 40,700,598 | Huang X, et al, Nat Genetics 2010 Nov... | 9,423 | Search for SNPs |
chr1 | 34,032,918 | 40,700,598 | RiceDiversity 44K SNP assay, 34 trait... | 9,423 | Search for SNPs |
chr1 | 34,032,918 | 40,700,598 | RiceDiversity 44K SNP assay, 34 trait... | 907 | Search for SNPs |